N. García-Pedrajas, and G. Cerruela-García (2024) “PYRAMID: A label hierarchical clustering approach for multi-label classification,” submitted.

N. García-Pedrajas, José M. Cuevas-Muñoz, G. Cerruela-García and A. de Haro-García (2024) “A thorough experimental comparison of multilabel methods for classification performance,” Pattern Recognition 151:110342.

N. García-Pedrajas, J. A. Romero del Castillo, A. de Haro-García (2024) “Improving the performance for multi-label problems through evolutionary label repopulation”, submitted.

N. E. Garcı́a-Pedrajas, J. Manuel Cuevas-Muñoz, A. de Haro-Garcı́a (2024) “False flag: An evolutionary false labeling approach for multi-label classification”, submitted.

N. García-Pedrajas, J. M. Cuevas-Muñoz and A. de Haro-García (2023) “Evolutionary simultaneous under and oversampling of instances for dealing with class-imbalance datasets in multilabel problems,” Applied Soft Computing, in press.

M, Mendoza-Hurtado, N. García-Pedrajas, R. Carrasco Velar, and G. Cerruela-García (2024) “The Activity Prediction Problem with Imbalanced Datasets: A Comparative Study,” submitted.


N. García-Pedrajas, José M. Cuevas-Muñoz, G. Cerruela-García and A. de Haro-García (2023) “Multi-label methods extensive experimental comparison focused on ranking performance,” submitted.

J. M. Cuevas-Muñoz, A. de Haro-García and N. García-Pedrajas (2023) “Sentiment analysis on review texts using category of words information and string kernels”, submitted.

N. García-Pedrajas (2023) “Partial random under/oversampling for multi-label problems,” submitted.


José Antonio Barbero-Aparicio, Santiago Cuesta-Lopez, César Ignacio García-Osorio, Javier Pérez-Rodríguez and Nicolás García-Pedrajas “Nonlinear physics opens a new paradigm for accurate transcription”, under review.

J.A. Romero-del-Castillo, Manuel Mendoza-Hurtado, Domingo Ortiz-Boyer and Nicolás García-Pedrajas (2022) “Local-based k values for multi-label k-nearest neighbors rule”, Engineering Applications of Artificial Intelligence 116, 105487.


Nicolás García-Pedraja and Gonzalo Cerruela-García, “Cooperative coevolutionary instance selection for multilabel problems”, under revision.

[Source code]


A. de Haro-García, J. Pérez-Parras Toledano, G. Cerruela-García and N. García-Pedrajas, “Grab’Em: A novel graph-based method for combining feature subset selectors”, IEEE Transactions on Cybernetics, in press.

[Supplementary material]


A. de Haro-García, G. Cerruela-García, N. García-Pedrajas, “Instance selection based on boosting for instance-based learners”, Patter Recognition 96, 106959.

G. Cerruela-García, A. de Haro-García, J. Pérez-Parras Toledano, N. García-Pedrajas, “Improving the combination of results in the ensembles of prototype selectors”, Neural Networks 118, 175-191.

G. Cerruela-García, N. García-Pedrajas, “A nonparametric weighted feature extraction-based method for c-Jun N-terminal kinase-3 inhibitor prediction”, Journal of Molecular Graphics and Modelling 90, 235-242.

G. Cerruela-García, J. Pérez-Parras Toledano, A. de Haro-García, N. García-Pedrajas, “Filter feature selectors in the development of binary QSAR models”, SAR and QSAR in Environmental Research 30 (5), 313-345.


A. de Haro-García, G. Cerruela-García, N. García-Pedrajas, “Ensembles of Feature Selectors for Class-Imbalanced Datasets: A comparative study,” submitted.

J. Pérez-Rodríguez, A. de Haro-García and N. García-Pedrajas, “Floating search methodology for combining classification models for site recognition in DNA sequences”, submitted. [source-code]

J. L. Sarmiento‐Villamil, N. E. García‐Pedrajas, L. Baeza‐Montañez, M. D. García-Pedrajas, “The APSES transcription factor Vst1 is a key regulator of development in microsclerotium‐ and resting mycelium‐producing Verticillium species”, Molecular plant pathology 19 (1), 59-76.

M. C. Cañizares-Nolasco, M. D. García-Pedrajas, “The Fusarium Circinatum Gene Fcrho1, Encoding a Purative Rho1 GTPase, Is Involved in Vegetative Growth but Dispensable for Pathogenic Development”, Forests 9 (11), 1-12.

M. C. Cañizares-Nolasco, M. D. García-Pedrajas, “Horizontal and vertical transmission of the hypovirulence-associated mycovirus Fusarium oxysporum f. sp. dianthi virus 1”, European Journal of Plant Pathology 152 (2), 645-650.

J. L. Sarmiento-Villamil, P. Prieto-Aranda, M. D. García-Pedrajas, “Characterization of two homeodomain transcription factors with critical but distinct roles in virulence in the vascular pathogen Verticillium dahliae”, Molecular Plant Pathology, 19(4), 986–1004.

M. C. Cañizares-Nolasco, F. J. López-Escudero, E. Pérez-Artés, M. D. García- Pedrajas, “Characterization of a novel single-stranded RNA mycovirus related to invertebrate viruses from the plant pathogen Verticillium dahliae “, Archives of Virology 163 (3), 771–776.

M. C. Cañizares-Nolasco, M. D. García-Pedrajas, E. Pérez-Artés, “Fusarium oxysporum f. sp. dianthi virus 1 Accumulation Is Correlated with Changes in Virulence and Other Phenotypic Traits of Its Fungal Host”, Phytopathology 108 (8), 957-963.

G. Cerruela-García, N. García-Pedrajas, “Boosted feature selectors: a case study on prediction P-gp inhibitors and substrates”, Journal of Computer – Aided Molecular Design, 32 (11), 1273-1294.

G. Cerruela-García, N. García-Pedrajas, I. Luque Ruiz and M. Á. Gómez-Nieto, “An ensemble approach for in silico prediction of Ames mutagenicity”, Journal of Mathematical Chemistry 56 (7), 2085-2098.

G. Cerruela García, N. García-Pedrajas, I. Luque Ruiz and M.Á. Gómez-Nieto, “Molecular activity prediction by means of supervised subspace projection based ensembles of classifiers”, SAR and QSAR in Environmental Research 29 (3), 187-212.

A. de Haro-García, J. Pérez-Rodríguez, N. García-Pedrajas, “Combining three strategies for evolutionary instance selection for instance-based learning”, Swarm and Evolutionary Computation 42, 160-172.

J. Pérez-Rodríguez, A. de Haro-García, J. A. Romero del Castillo, N. García-Pedrajas, “A general framework for boosting feature subset selection algorithms”, Information Fusion 44, 147-175.


Y. Landeo-Ríos, J. Navas-Castillo, E. Moriones-Alonso, M. C. Cañizares-Nolasco, “The Heterologous Expression of the p22 RNA Silencing Suppressor of the Crinivirus Tomato Chlorosis Virus from Tobacco Rattle Virus and Potato Virus X Enhances Disease Severity but Does Not Complement Suppressor-Defective Mutant Viruses”, Viruses 9 (12), 358.

Y. Landeo-Ríos, J. Navas-Castillo, E. Moriones-Alonso, M. C. Cañizares-Nolasco, “Viral Suppression of RNA Silencing in Plants”, Revista Filotecnia Mexicana, 40 (2), 181-197.

S. E. Gold, Z. Paz, M. D. García-Pedrajas, A. E. Glenn, “Rapid Deletion Production in Fungi via Agrobacterium Mediated Transformation of OSCAR Deletion Constructs”, Journal of Visualized Experiments.

N. García-Pedrajas, J. A Romero del Castillo, G. Cerruela-García, “A proposal for local k Values for k-Nearest Neighbour Rule”, IEEE Transactions on Neural Networks and Learning Systems 28 (2), 470-475.


Y. Landeo-Ríos, J. Navas-Castillo, E. Moriones-Alonso, M. C. Cañizares-Nolasco, “The p22 RNA silencing suppressor of the crinivirus Tomato chlorosis virus preferentially binds long dsRNAs preventing them from cleavage”, Virology 488, 129-136.

J. L. Sarmiento-Villamil, N. García-Pedrajas, L. Baeza-Montañez, M. D. García-Pedrajas, “The APSES Transcription Factor Vst1 is a Key Regulator of Development in Microsclerotium and Resting Mycelium Producing Verticilium Species”, Molecular Plant Pathology.

Y. Landeo-Ríos, J. Navas-Castillo, E. Moriones-Alonso, M. C. Cañizares-Nolasco, “The p22 RNA silencing suppressor of the crinivirus Tomato chlorosis virus is dispensable for local viral replication but important for counteracting an antiviral RDR6-mediated response during systemic infection”, Viruses 8 (182), 1-8.

N. García-Pedrajas, C. Cornelis, “Improving nearest neighbor classification using Ensembles of Evolutionary Generated Prototype Subsets”, Applied Soft Computing 44, 75-88.

J. Pérez-Rodríguez, N. García-Pedrajas, “Stepwise approach for combining many sources of evidence for site-recognition in genomic sequences”, BMC Bioinformatics 17.


E. Islamovic, M. D. García-Pedrajas, N. Chacko, D. L. Andrews, S. F. Covert, S. E. Gold, “Transcriptome analysis of Ustilago maydis ust1 deletion mutant uncovers involvement of laccase and polyketide synthase genes in spore development”, Molecular Plant-Microbe Interactions 28, 42-54.

M. C. Cañizares-Nolasco, C. Gómez-Lama-Cabanás, M. D. García-Pedrajas, E. Pérez-Artés, “Study of phylogenetic relationships among Fusarium oxysporum f. sp. dianthi isolates: confirmationof intra-race diversity and development of a practical tool for simple population analyses”, Plant Disease 99, 780-787.

M. C. Cañizares-Nolasco, M. D. García-Pedrajas, “First report of bacterial stem and pith necrosis of tomato caused by Pseudomonas viridiflava in Spain”, Plant Disease 99.

M. C. Cañizares, T. V. Rosas‐Díaz, E. A. Rodríguez‐Negrete, S. A. Hogenhout, I. D. Bedford, E. R. Bejarano, J. Navas‐Castillo, E. Moriones, “Arabidopsis thaliana, an experimental host for tomato yellow leaf curl disease‐associated begomoviruses by agroinoculation and whitefly transmission”, Plant Pathology Journal 64, 265-271.

J. Pérez-Rodríguez, N. García-Pedrajas, A. G Arroyo-Peña, “Simultaneous instance and feature selection and weighting using evolutionary computation: Proposal and study”, Applied Soft Computing 37, 416-443.

C. G. Lemus-Minor, M. C. Cañizares, M. D. García-Pedrajas, E. Pérez-Artés, “Complete genome sequence of a novel dsRNA mycovirus isolated from the phytopathogenic fungus Fusarium oxysporum f. sp. dianthi“, Archives of Virology 160, 2375-2379.

L. Baeza-Montañez, S. E. Gold, E. A. Espeso, M. D. García-Pedrajas, “Conserved and Distinct Functions of the “Stunted” (StuA)-Homolog Ust1 During Cell Differentiation in the Corn Smut Fungus Ustilago maydis”, Molecular Plant-Microbe Interactions 28, 86-102.

M. C. Cañizares-Nolasco, N. García-Pedrajas, E. Pérez-Artés, M. D. García-Pedrajas, “Characterization of a new partitivirus strain in Verticillium dahliae provides further evidence of the spread of the highly virulent defoliating pathotype through new introductions”, Phytopathologia Mediterranea 54, 516-523.

Y. M. Landeo-Ríos, J. Navas-Castillo, E. Moriones, M. C. Cañizares-Nolasco, “Genetic diversity and silencing suppression activity of the p22 protein of Tomato chlorosis virus isolates from tomato and sweet pepper”, Virus Genes 51, 283-289.


M. C. Cañizares-Nolasco, E. Pérez-Artés, M. D. García-Pedrajas, “The complete nucleotide sequence of a novel partitivirus isolated from the plant pathogenic fungus Verticillium albo-atrum“, Archives of Virology 159, 3141-3144.

A. Peiró, M. C. Cañizares, L. Rubio, C. López, E. Moriones, J. Aramburu, J. Sánchez‐Navarro, “The movement protein (NSm) of Tomato spotted wilt virus is the avirulence determinant in the tomato Sw‐5 gene‐based resistance”, Molecular Plant Pathology 15 (8), 802-813.

J. Pérez-Rodríguez, A. G Arroyo-Peña, N. García-Pedrajas, “Improving translation initiation site and stop codon recognition by using more than two classes”, Bioinformatics 30 (19), 2702-2708.

A. De Haro-García, N. García-Pedrajas, J. Pérez-Rodríguez, “A Scalable Memetic Algorithm for Simultaneous Instance and Feature Selection”, Evolutionary Computation 22, 1-45.

N. García-Pedrajas, A. De Haro-García “Boosting instance selection algorithms”, Knowledge-Based Systems 67, 342-360.

E. A. Rodríguez-Negrete, S. Sánchez-Campos, M. C. Cañizares-Nolasco, J. Navas-Castillo, E. Moriones, E. R. Bejarano, A. Grande-Pérez, “A sensitive method for the quantification of virion-sense and complementary-sense DNA strands of circular single-stranded DNA viruses”, Scientific Reports 4 (6438), 1-9.